NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1009729

Scaffold Ga0209234_1009729


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1009729 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3642
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024073Metagenome / Metatranscriptome207N
F030039Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10097292F024073GAGMADLWVVVGFLSFFGTITGLLAVTFLAFTRMDKDVRRARMFIMEKRIQRFLGAFTFAFIALTVLICASTIAFGLPAAIGTGLLVVWLGGMGYGTYELFLIVRPPKGTLLRLVKKSNTGRSVLLEKAAILDRSGRDRDAAK
Ga0209234_10097294F030039AGGTGGMGSTGASAPLRAEEVVRRFYDFLARGRLVDALNLFTTDARLRDASGRESAGIRAITSSLLTYRVPQDIAVEQMEPEDGEIRATIRSPGGRSVGRFSVARGRIKSLRMERA
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