NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1040174

Scaffold Ga0209234_1040174


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1040174 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1779
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010339Metagenome / Metatranscriptome305Y
F014886Metagenome / Metatranscriptome259N
F029909Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10401741F010339AGGAGMASLFFTCPTTHQQAPTAIETDVQSLRAAWKATLNVKCPHCGEAHEISVRETYINGALQDATDRLRNI
Ga0209234_10401742F014886AGAAGVISALVLLAAVGFTLVAAYQWAGRLGAFDVTSRELAVRNWQSHVWQGHVWNTVLAIILWLVWFYG
Ga0209234_10401744F029909AGGVSDGANEMTRRLPPPWRAEKFSGGYVVRDANGFAVAYVYGRRRSHGG
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