NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1000023

Scaffold Ga0209235_1000023


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1000023 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52801
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (67.80%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001093Metagenome / Metatranscriptome780Y
F009323Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0209235_100002317F001093GAGMPNQLRLSRVYRFIDEQTGAPQISDFPDSNPTGDTPLEIRMKHFTEIENFTFLGYVLAHELGGTTPRPIRTVEDLEVPDEEFQKFVDEAKTAMLTDEELGDTVLDVGINWEHFVASTDSQLLPEHPLKITDVLMQEKIDALDFITEAFVREVNLRSIEKQTGAQGRKSK
Ga0209235_100002334F009323AGGAGMLDPIVIPTLYFITIFQLILQAAVFYYAYRVTKMTGSFRAWTLIILAFALLTVRNVVSLILTLSLPANQVSSLIESVGATTTILSSAINVAASIALFLGMFGLVRRFQSQPKAP
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