Basic Information | |
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Taxon OID | 3300026296 Open in IMG/M |
Scaffold ID | Ga0209235_1000027 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 51133 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (61.70%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001047 | Metagenome / Metatranscriptome | 793 | Y |
F001940 | Metagenome / Metatranscriptome | 614 | Y |
F012209 | Metagenome / Metatranscriptome | 282 | Y |
F029079 | Metagenome / Metatranscriptome | 189 | N |
F033386 | Metagenome / Metatranscriptome | 177 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209235_100002718 | F033386 | N/A | MFIFEKPKDKPPHSLGVKLAKFMLSLRDESFELLQTEAEDRGISIQELIRAVIIPDWVKVNTAARPAFDNGNNGLRAYRSSAPPRDQEQMFQPAMSRIR |
Ga0209235_100002724 | F001940 | GGA | MSAKSMKTALKGTSIEEKDAKQIISGVQAMYDKIPGFLRPMLPSLPDILKRIPSSAGKYTLNEIIQLLDWAYESGQLKK |
Ga0209235_100002733 | F012209 | AGG | MTENQKPQSKLYLGLADQRFLATVVDASLKRGSGLSIALSDATVGISLDKLGDWTITVGLSSRSDQFRQSISSLETLGFFQATENEGNTYMLWTSLLSEDGEARIVAEQTLLQALKALKEHTISPYIS |
Ga0209235_10000275 | F001047 | N/A | MRETIFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREDKFTLAIKQFENLMVDFLRLYQPILDRLRSYREGMQKEITSLRSSLATVNGMLEVSKGIEGLAPRIQQLEVNGQELDANINEKMKIANKIDDLFNRVRPFQTGGAGPMGRDSLSDVLAGMPKDLFPETPEPANEKTRKTGTRN |
Ga0209235_10000277 | F029079 | N/A | MPQKNESSPSSLAEVFEKMAEKDYAFNFDVTMELATSSLRVGTVRVHGKVESAALKKK |
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