Scaffold Ga0209235

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1000035 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209235_1000035 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	49037
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (80.70%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

49037

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (80.70%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.718176

Long. (^o)

-123.652732

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002133	Metagenome / Metatranscriptome	590	Y
F002161	Metagenome / Metatranscriptome	588	Y
F011377	Metagenome	291	Y
F059828	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100003521	F011377	AGG	LRTQISTLFHETVNECFRNALDGMGSTVRDVIYDLLAKKGIERPEISSRFDDVVAVLMDSLGASARVLIYRTMTLLCQEYQVRADFSYQDSLRDRMVLLRDRVVADHLYPKRVQRNDPVFSTPNTAQFAQNPGTTLSSGK
Ga0209235_100003527	F002161	GGA	VPTTHHPPVHHDNNHSIPTSHAAPHSGAPRIKVPYSKNPVYVAEGYSPPVVSGRNFEYETTPQNAAYWQALTLTYRQAMKKEADTRGIDLRLLLDERRSGAFHCVGCGKPMVMRELFANGDRVYQCWNGDCVKRIIRYQYQAQTGRVIEVT
Ga0209235_100003530	F002133	AGG	MAILVRVPVPILEDLVEAAVSKQGNIYRAELAKLIGASKESLDGKTSLYLISLMKLCGFAEADMANVLRKSKIVNQRGAVTHDISAEVELKGVIDNALEGFQLLISESFKPTEKEKGGLFNPAAYRKKPPEK
Ga0209235_100003536	F059828	AGGAG	MDPVILEFVGGILAGTLVVLTVMFRTGHLTMVLRTSSASPKKMPMLAIRKTRSVSSRHRKISAPSRKGQSTVSVARTRRKARTKTPEATIAPSQTPNIASATVSFDTCPSCGLQAPGSLLAEHFLGSPSHRNAPPRIAKVDAAEVERAEEIKEEDSKQSVRNLLQMLVPPRAFGRRHAHRLMSPISSIVKELGPSPRRFP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209235_1000035

Overview

Ecosystem & Geography

Associated Families

Sequences