Scaffold Ga0209235_1000038

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209235_1000038

Scaffold Ga0209235_1000038

Overview

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1000038 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	47098
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (64.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006583	Metagenome / Metatranscriptome	369	N
F019369	Metagenome / Metatranscriptome	230	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_100003822	F006583	GGA	MVNCSACSGIIHRDEPVSAAFSQEGKRSYYHKGCEEKAEYLSRWREEAAWAFRPVRLSVTEWEACSPKKHLGVWQSIFIARRDEDIWCPDCGLKIARHEGLTCSSCGSHAIVVGVESTKMVFTHRQPLYKLLVHCTEKGEDSTSYAISSGFTPVAITSRRKGEATESQQSVMMLEYEPKENLKKGLKV
Ga0209235_100003847	F019369	AGG	MSTVEIENYRWKCENFLKGYCPGKDCDICAKMTNRLLLKGLVKITHADEILQPQQAATPTSQP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.