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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026296 Open in IMG/M |
| Scaffold ID | Ga0209235_1000526 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19535 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (70.83%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025703 | Metagenome / Metatranscriptome | 200 | N |
| F038177 | Metagenome / Metatranscriptome | 166 | Y |
| F051819 | Metagenome | 143 | N |
| F104817 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209235_10005262 | F051819 | GAG | MPSPLVNRYAIYFQLPDQGKVPQSIAREPSLLMAVENCLNTYHATGHTGFVIDDTRAHREFNIERELLLQLLFLRHQDRTRYFEILNRLDRQGNQEELVSFLQAHARL |
| Ga0209235_100052620 | F038177 | AGTAGG | VAQSESLKAHCVDDDSWRRELCPECGARLLGFPAWKLHGSRHGWGSDWFSARVRAGRPGEIIRVNPDVLGRESISLVVDTVEDATWKSGIPA |
| Ga0209235_100052623 | F025703 | GGA | MSAERQKIRAAEWLYRWNLSMSILGIVFTILTFVGVFTLVLHQYFAEFGLDEAEVLLVLLAVVLVIIFGFGFYLDKFLRFWSAQTTVATVRNQFLTSALYQKELLIMKYSQIPQMEGLLHLIEELPDSPGKTRLVDHFRESLRKLHQTVETKEWEVTPEERTY |
| Ga0209235_10005266 | F104817 | GGA | MVATVTGLWFPGVKLPQFDFNKLNGWLALVGVGGGLDYAWNNPSLTFVVGGVIHMIDGIIWAVIFGLVISPVLGVVIKPLRAMTPTVNLIKGLIWGGALWIISSALWMPLLIGPIFNLSPLNTFGLPCGVGPFLTCFGPYGVQALFTNLFWHMIWGVNLGLLFSPMRAASRVRW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |