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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026296 Open in IMG/M |
| Scaffold ID | Ga0209235_1002343 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10514 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Angelo Coastal Reserve, California, USA | |||||||
| Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020655 | Metagenome | 222 | Y |
| F039066 | Metagenome | 164 | Y |
| F041122 | Metagenome | 160 | N |
| F056479 | Metagenome | 137 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209235_10023432 | F056479 | AGGA | MIAFRAKLLSAHPQCYPSVGVIEGWEFPWVKPVLRTEPMSESETVREQGGWVLTASIANSVLGFGFWALAAHLFSSGAVGIAGALVSLSSLATSIGILGLDNGLVRFATRVDRPRALMWELLLIGGTLSAIVGLALSATVLTLSAKDLQVTLTEQQFVVLVLLTVVLTGSQTSFQITDGSILAARRSQYLAFRAVAYGLVKILLLFALVEATVVGLFGAYTLPLFAVTLVSFFLVRRVWPVRNETGVPHRFREVASLSFGNWISGLAYSLPSRLGPSIMLIFVGASPVAYFFIALQLAEILNYIPESVSKSLYAHGSLHDRLPAALTSSMRRLLLAILVPMVALGVLLAQIGMTIVGGTTYGNHGLALQLFLLATLPKAGIQLYKAQFNVDRRPMALIVMGSALGLSTLAFLMLGLVLRVDPDRLPLAWILGGILALGVGWWLSRRRFPIQPGPQVSEG |
| Ga0209235_10023435 | F039066 | GGGGG | VNARILAFLLATVGMLIVSGIAAPQVRAAPAPTLSIVSPSPNAVIGNGSPVVVVFAVTNFNLTDSRNGTSSPDSGHVDVFVDGGWTAKASINTIVLALPSGPHTIRLRLVTDNGSALNPDVTASVAVMMTQGPAGGTPGLSIFYPREGALLGTDSTISFQVTNFAVVPPGGPAGVPNEGHVRVLLDRVYYADLTDVAPLHLNLKDGSHNVTLQLVDNGGSPLNPDVRVGLHITVQALVGRVTRFDATPFLALANLLIGLGILAAIYRKLEAR |
| Ga0209235_10023436 | F041122 | GGAGG | VRLKKFATTLPAKARRGSSMLALGVLTSLLLASIVSSPAAAAAPSLTIVSPTDGAVIGNGTRVLVQFLVSNFAFVQPGRVGQIASPNEGHANVLLDAQLVRLLTDVEPFSLPLISGPHLIRIQLVADNGTALNPDVSASVHVVATQGPGAGVPRITILSPRPAESTGHGIYVSYRIENFTLVEPRGQPNAPNEGHVQLLVEKQVVMEVIQYEPVLLVSLPEGDITISARLVNNDNTPLNPDATSNVLIHVVASSAVSLPLVSNGGVALLLAFILVVLILRRQKVVGRPPNNRGGNR |
| Ga0209235_10023437 | F020655 | GGA | MRAAALVLIGTLLVAVLGLSAPGVRAAGPTLTIVSPADHAVIGNGTPVLVIFVVSDFNLTPPGTGGPSPTDGHVAVYVDGMLTMATSQETIELPLASGTYTILLRLVADNGTSLNPDVTSSISVTVTQGPAVGTPRIHITYVEITYPTPKLVLGRDVTISFNVTDFALVPPGRGAAVPNEGHVAVFLDGVYVMAVMAFRPIPFSDLLDGDHNVTVRLVNDAGQPLTPDASDSVTFRIQFAAIVDINPYLEVAQIILAGAIFFVLFYRGWGRSMFAMISARIGRKNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |