NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209235_1004956

Scaffold Ga0209235_1004956


Overview

Basic Information
Taxon OID3300026296 Open in IMG/M
Scaffold IDGa0209235_1004956 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7439
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014491Metagenome / Metatranscriptome262N
F016384Metagenome / Metatranscriptome247N

Sequences

Protein IDFamilyRBSSequence
Ga0209235_10049561F014491N/ALKGEPHQRSSLNVTPGNPKSWHNAAMILLILASLAMFGTIAYTIALQEITNSAISYITGLLISVTGILLGLSGLTPQSKSLERTKLQVTLTITTLLWLVAVVMIAQTASPFTFEASTAILRYLFLVGVALFTILVVMYSTTTIEATRQRLIAEQAAKSNQPGRTTG
Ga0209235_10049565F016384AGGMSLTRNLDFCQSGDGSKAWSEVLGLREDFKSHLAWVMGLGRLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKETSFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVSAASITYTTRDIPELLRLTSAVKRFRELLSKTMSQWSSKLDRKDSPPAPKGS
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