Scaffold Ga0209235_1071797

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209235_1071797

Scaffold Ga0209235_1071797

Overview

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1071797 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1575
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002354	Metagenome	567	Y
F030382	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10717971	F002354	AGG	VFETKVVHVVPPSVDLSTLYPVMAEPPLSAGTLQLRLICEEETAVAASPVGEDGATARVVADALFEAEPVPTELIAETL
Ga0209235_10717972	F030382	AGTAG	LYPEMAEPPLSLGAVQLKLTWEADTVVAVSPVGVDGATARVVAEALLEGELVPIELMVYTLYV
Ga0209235_10717975	F002354	N/A	ATSVVQVVPPSADLSILYPVIAEPPLSLGAVQLKLICEEDTDVAVSPVGGDGATASVVAEAVLEGEPVPIELMAETL

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