Scaffold Ga0209235_1088536

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209235_1088536

Scaffold Ga0209235_1088536

Overview

Basic Information
Taxon OID	3300026296 Open in IMG/M
Scaffold ID	Ga0209235_1088536 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1362
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.718176	Long. (^o)	-123.652732	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001925	Metagenome	616	Y
F018335	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209235_10885362	F018335	N/A	VTRYVPGVEEDGAHVPVTALGPVTVRLAGQLAASPVDGETTAVRVTVPVKPLTGVTVIVELPVAPVLKSAGEETEIVKSPTKVNTAVVE
Ga0209235_10885363	F001925	AGG	VVELNVQEAATVALAVMLTGAGHVTVNPVAGLVTGVRVIVPAKLKVLVRETEIAEPVAPELKLTGVTVEIVKSPTCETKLAL
Ga0209235_10885364	F001925	N/A	GEPAAVMVTPYVPAVVELRVQEAATVAFAVMLTGAGHVTVNPVAGLVTGVRATVPAKLKVLVRLTDIAEPVAPELKLTGVPTLTVKLPTWTTTRLAVCDAVPGEPAPVMVTP

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