NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1002164

Scaffold Ga0209237_1002164


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1002164 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11763
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F018335Metagenome235Y
F093604Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_100216415F001925AGGVDDRVHDAATVAFAVILTGAGHVTVKPVDGLVTSVRATVPAKLNVLVKLTDIEAPVAPKLKFTGLPTEMVKSPTCEMKLAL
Ga0209237_100216416F018335AGGVEEDGAHVPVTAPDVTVRLAGQLAARPVEGETTVVRVTAPVKLPIGVMVIVELPVAPVLKSAGDVAEIEKSTVANVNTAVA
Ga0209237_100216417F093604AGGVNALQITPAGRGVSERATEPTKLKVLVRVIVEDIDVPVAPLGDVALIVKSPTWDTKLAV
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