Basic Information | |
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Taxon OID | 3300026297 Open in IMG/M |
Scaffold ID | Ga0209237_1003781 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9196 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.73825 | Long. (o) | -123.6301 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F081645 | Metagenome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209237_10037815 | F081645 | N/A | MLRPLYLTVPTRLRESSSPTGLAQPTELSAASADQTVIQQLLALHEKMDALIGFLTHERLSGQSLDGLPVERAMCVELGANGLRMAGYRRAGAGDFLELSLHLPEGTTPAVTMIGQLVYEMTMSSQDEKQAGIVFTAAHQEDRAAINRYISHGQS |
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