Scaffold Ga0209237

Basic Information
Taxon OID	3300026297 Open in IMG/M
Scaffold ID	Ga0209237_1006448 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209237_1006448 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7074
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (56.52%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (46.67%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7074

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (56.52%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (46.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001925	Metagenome	616	Y
F016512	Metagenome	246	Y
F018335	Metagenome	235	Y
F042815	Metagenome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_100644810	F042815	GGAG	VPAVAEDSEQEDVTVAFAVIATAVAGQVIVRPAGAAPVRVTDPAKLNVLVRDTPTETPVCPTFRFAPVALIVKSPT
Ga0209237_100644811	F042815	N/A	VPAVVELKLQEAVTVAFAVIATAVAGQVIVRPAGAVPVSVTEPAKLNVLVRETPTETPVCPTFRLAPVALIVKSPT
Ga0209237_100644812	F042815	AGG	MDDSEQDEVTVAFAVIATAAAGQVIVRPAGAVPVRVMLPAKLNVLVRETPTETPVWPTLRLAPVALIVKLPTWTVAGAE
Ga0209237_100644814	F042815	N/A	VDDSEQDDVTVAFAVMATAVAGQVIVRPAGAVPVRVMLPAKLNVLVRETPTETPVWPTFRLAPVAVMVKSPTWTAAGAE
Ga0209237_100644816	F042815	GGAG	VPAVAEDSEQEDVTVAFAVVATAVAGHEMVRPAGAVPVRVIEPAKLNLLVSDTPTETPVWPTFRLAPVTEIVKSPTWTVVGAE
Ga0209237_100644817	F042815	N/A	VEDNEHEDVTVAFAVIATAVAGQVIVRPAGAVPVSVTEPAKLNVLVRETPTETPVCPTFRLAPVALIVKSPT
Ga0209237_100644818	F016512	GGAG	MFTMKEPAVGEVHERLDVAVALAVSDTGVTVNALQVKPAGRGVSERATEPTKLNVLVNVIVEEIDEPAAPLGFEALIVKSPT
Ga0209237_10064482	F001925	AGTAG	VHEAATVALAVILTGAGHVTVNPVAGLVTGVRATVPAKLNVLVRETDIAAPVAPELKLTGEPTLMVKSPT
Ga0209237_100644820	F042815	N/A	VVDDSEQDEVTVAFAVIATAAAGQVMVRPAGAVPVRVMLPAKLNVLVRETPTETPVWPTLRLAPVALIVKSPTCETKLAV
Ga0209237_100644821	F042815	N/A	VPAVVELNEQEDVTVALAVMATAVAGQVIVKPAGAVPVSVIDPAKLNVLVRETPTETPVCPTLRLAPVALIVKLPTWTVAGAE
Ga0209237_100644823	F042815	N/A	EPAPLTLTAYVPAVVEDNEHEDVTVAFAVIATAVAGQVIVRPAGAAPVRVMLPAKLNVLVSETPTETPVWPTFRFAPVALIVKLPTWTVAGAE
Ga0209237_10064484	F001925	GAG	VPGEPAPVMVAPYVPAVVELRVHEAATVAFAVILTGAGHVTVNPVAGLVTGVIVTVPAKLNVLVKLTDIAEPVAPELKFTGLPTEIVKSPTWTVETAE
Ga0209237_10064486	F018335	N/A	VTAPETTVRLAGQLAARPAAGETTVVRLTVPVKPPDGVTVIVELPVAPVLKSAGEVAVIEKSPPKVNVAVVG
Ga0209237_10064487	F042815	AGG	VDDSEQDDVTVAFAVIVTAVAGHVIVRPAGAVPVRVIEPAKLNVLVRDTPTETPVWPTLRLAPVALMVKSPTWETKLAL
Ga0209237_10064489	F042815	N/A	VDESEQDDATVALAVIATAVAGHVIVRPAGAVPVRVILPAKLNVLVRETPTETPVCPTFRLAPVTLIVKSPTWTVAGAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209237_1006448

Overview

Ecosystem & Geography

Associated Families

Sequences