NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1009697

Scaffold Ga0209237_1009697


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1009697 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5763
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016512Metagenome246Y
F018335Metagenome235Y
F042815Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_100969710F042815N/AVPAVVELNEHDAVTVAFAVMATAVAGQVIVSPAGAVPVRVTEPAKLNVLVRETPTETPVWPTFKLAPVALIVKSPTCETKLAV
Ga0209237_100969712F018335AGGVEEDGLHVPVTALGPVIVRLVGQLAVRPVDGETVVTRLTVPVKPCNGVTVIVELPVAPVLKSAGDVAVIEKSPPKVNVADVG
Ga0209237_100969713F016512GAGGVPAALMFTMKLPTVGEVHERLDVAVAFAVSDTGVTVNALQVKPAGRGVSERATEPTKLNVLVILIVEEIDEPAAPFGDVALIVKSPTWTVAAAE
Ga0209237_10096978F042815N/AVVDDSEQDDVTVALAVMVTVVAGQVIVRPAGAVPVRVMLPAKLNVLVSETLTEIPVWPTFRLAPVALIVKSPT
Ga0209237_10096979F042815N/AVADDSEQDEVTVAFAVMATAVAGQVIVSPAGAVPVRVMLPAKLNVLVRETPTETPVWPTFRLALVALIVKSPT
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