NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1019115

Scaffold Ga0209237_1019115


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1019115 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3943
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018335Metagenome235Y
F042815Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_101911510F042815GAGVPGEPAPLTLTAYVPAVVELNEQDDVTVAFAVMATAVAGQVIVRPAGAVPVRVMLPAKLNVLVRETPTETPVCPTLRLAPVALIVKLPTWTVAGAE
Ga0209237_101911512F042815AGGVDDSEQEEVTVAFAVIATAVAGHVIVRPAGAVPVRVMDPAKLNVLVRETPTETPVWPTFRLALVALIVKSPTWTVAPAE
Ga0209237_101911513F042815N/ALKLQEAVTVAFAVIATAVAGQVMVRPAGAVPVRLTLPAKLNVLVRETPTETPVWPTFRLAPVVLIVKFPTWTVADAE
Ga0209237_10191152F042815N/AVDDNEHEDVTVAFAVIVTAVAGQVIVRPAGAVPVNVTDPAKLNVLVRETPTETPVCPTFRLAPVALIVKSPTWTVAGAE
Ga0209237_10191155F018335AGGAVIVRLVGQLAVRPVDGETVVTRLTVPVKPCNGVTVIVELPVAPVLKSAGDVAVIEKSPPKVNVADVG
Ga0209237_10191158F042815N/AVVDDREQEDVTVALAVMATAVAGQVMVRPAAAVPVSVMDPAKLNVLVSETLTETPVCPTLRLAPVAEIVKSPTWTVAAAE
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