Scaffold Ga0209237

Basic Information
Taxon OID	3300026297 Open in IMG/M
Scaffold ID	Ga0209237_1034701 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209237_1034701 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2709
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2709

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001925	Metagenome	616	Y
F016512	Metagenome	246	Y
F018335	Metagenome	235	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209237_10347012	F001925	N/A	MLTLYVPAVVELNVHDAATVAFAVMLTGAGHVTVKPAGLTIGVRPIVPAKLNVLVSETEIEDPVAPELKFTGLLTEIEKSPTWETKLAV
Ga0209237_10347013	F001925	AGG	VDDRVQDAATVAFAVMLTGAGQVTVSPVTGLVTAARLIVPAKLNVLVRETDIEEPVAPELKLTGVPTLIVKLPTWTVETAE
Ga0209237_10347014	F001925	GGAG	VQEAATVAFAVMLTGAGHVTVNPVTGLVTGVRATVPAKLNVLVRETEIAEPVAPELKLTGEPTLIVKLPT
Ga0209237_10347015	F016512	N/A	MFTMKVPTVGEVHERLDVPVLLAVRDTGVTVNGLQLKPAGTVSLRATDPAKLNVLVRVIVELIDEPAAPLGDVALIVKSPTWTVEAAE
Ga0209237_10347016	F018335	GGAG	VTAPETTVRLVGQLAARPVAGETTVVKLTAPVKPPDGVIATVELPVAPVLKSAGEVAVIEKSAPTVKVNVADVE
Ga0209237_10347017	F001925	AGTAG	VHEAATVALAVILTGAGQATVNPVAGLMTGVRATVPAKLNVLVKLTDIDEPVAPELKFTGLPTEMVKSPTCEMKLVE
Ga0209237_10347018	F001925	AGG	VDDRVQDAATVAFAVMLTGAGHVTVNPVAGLVTAARVTVPAKLNVLVKLTDIAEPVAPELKLTGLPTLIVKLPTWTTKLAE
Ga0209237_10347019	F016512	N/A	VPAALMFTTNEPVVGEVQDNEEVPVPLAASDTGVTVNALHVKPAGRGVSERATVPTKLNVLVRVMVEEIDEPAAPLGDVALIVKSPTWTVDTAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209237_1034701

Overview

Ecosystem & Geography

Associated Families

Sequences