NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209237_1062693

Scaffold Ga0209237_1062693


Overview

Basic Information
Taxon OID3300026297 Open in IMG/M
Scaffold IDGa0209237_1062693 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005023Metagenome / Metatranscriptome414Y
F036632Metagenome / Metatranscriptome169Y
F099721Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209237_10626931F036632N/AMSRDATLLIERGGAVALSADGRHQLHSQWLVWHHDPGARAKAGAAGKRLVREGRGAAERTTALVKKLVGGG
Ga0209237_10626933F005023GAGGMKRTALTLALGLLATPAAAQWLGEPMWNDPQAGSGFTIYGDYSRPNTEAGGGTAFGGRVTLGAGTFTLTGGVSSWDPDLVSQRLLSVGGTAGFRLIGGSLIPVAVNLQLGGGHSFEVTSSTTTSPVQTMLHAAVGLSVPLPTPVVSIEPFVSPGIRYHHYSNVAPGAPVHEVNFGWVIGGNVGVGPIGIHVAYDSEKFDDGTTHNVFGVGASIGLRP
Ga0209237_10626934F099721N/AAAGFSVPLPTPGISIEPYFSPGIRYHSSGGANTTQFGYVFGANLSFGLVGVHLAYDNERLKGGGNRGVFGVGAHLDLHLPLGM
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