NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1004002

Scaffold Ga0209236_1004002


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1004002 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8999
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010021Metagenome / Metatranscriptome309Y
F043318Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0209236_100400212F010021GAGGVTRPPRVQLLGLLPAILKPCGPACAQPFTNRNVEALRDEEWHETPAFVIENANRAHRIAEDLFRDFGDRVRIEVVGLDSPRGVWLGLRHHVGKGFAVIVDGRDVFRDPSDYDPVKGAVSRALSIRPWPP
Ga0209236_10040024F043318N/AVAIPPVGQLPEPLRLPHGSVRGAIAVIVTAAYGYVLLQGGSTPTVPTVLVNAVVVVIAFYFGSRAVSTPSALVPGQTAPPAPHHPRLVRILLFLGFASLTAWFLTRNPSLQGIPADLLAVLQVLGGYVLGATASWLVHRRAHESHIRHRLATIFRDIVAVGALGLTAYICFALVTKQGGLLAGRAEQALSLVVTFYFGSRVIGH
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