NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209236_1050041

Scaffold Ga0209236_1050041


Overview

Basic Information
Taxon OID3300026298 Open in IMG/M
Scaffold IDGa0209236_1050041 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2091
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001925Metagenome616Y
F093604Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209236_10500411F001925N/AVPAVVELKAQEVATVALAVMLTGAGHVTVKPVAGLVTGVRVTVPAKLKVLVKLTDIDEPVAPELKFTGVPTLIVKLPT
Ga0209236_10500412F001925AGGVTVAFAVILTGAGHVTVNPAAGLVTGVRVTVPAKLNVLVKLTEIAEPVAPELKFTGLLTEMVKSPT
Ga0209236_10500413F001925AGGVVELRVQEAATVAFAVILTGAGHVTVSPVAGLVTGVRVTVPAKLNVLVKLTDIAEPVAPELRLTGVPTLIVKLPT
Ga0209236_10500414F001925N/AVHDAATVAFAVILTGAGQVTVKPVAGLVTGVRATVPAKLNVLVKETEIAEPVAPELKFTGLPTEIVKSPTCEMKLVE
Ga0209236_10500416F093604GAGVPLAVNDTGVTVNALHVKPAGRGVSERPTEPTKLNVLVSVIVEEIDEPVVPLGDVALMVKSPTWTVELAE
Ga0209236_10500417F001925N/AVHDAATVAFAVILTGAGQVTVNPVAGLVTGVRATVPAKLNVLVKLTDIDEPVAPELKFTGLPTEMVKSPTCEMKLAL
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