NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209027_1002394

Scaffold Ga0209027_1002394


Overview

Basic Information
Taxon OID3300026300 Open in IMG/M
Scaffold IDGa0209027_1002394 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7131
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001545Metagenome / Metatranscriptome673Y
F001681Metagenome / Metatranscriptome652Y
F009972Metagenome / Metatranscriptome310N

Sequences

Protein IDFamilyRBSSequence
Ga0209027_10023943F001681N/AMKTLRLQRDPDGLFLWHPDYAPWIVGRRSREANPNDRAFFDPKAGEIVWSSRDGMKDYEMEELAARHLVGELVEMPPCESEREVEAWFLERGFRVEWI
Ga0209027_10023945F001545N/AMPRDIDVVGVWHGTPYQVASLSSTADGVIVACGPAGENTTYPKTGHRHTKDPSSDTSTWRERQVLSDATLAQPLQVMAFSGAKPPAWAKPHADRPSHDSFIFQVQTDGQVRLALVGVREADDAVIVVTKQSATAHRLFRRYAPNVLMWTVPADA
Ga0209027_10023946F009972N/AMLESSLRFRLVIARAADSTPGDVSGIVTRLHTDTELFWLLRIAQPVAAAPKVCRRSVATCLALLMLDDHLRVLRVLPMASVPHTPGTGVLRRDGVIQTYLGGVLPPRALADTKRIAELLIDGHSSYLDTLCQALSSDETCDGFEAVPADHELYDPEAAQYFAPPLTAWYRAGVLVHPVVPRTGTT
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Institute for Fundamental Biomedical Research
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