NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209027_1009284

Scaffold Ga0209027_1009284


Overview

Basic Information
Taxon OID3300026300 Open in IMG/M
Scaffold IDGa0209027_1009284 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3711
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y
F004349Metagenome / Metatranscriptome442Y
F006952Metagenome361Y

Sequences

Protein IDFamilyRBSSequence
Ga0209027_10092841F006952GGAGGVIGPLGSANREIREADRRDQLRRRARLAEPRRLTDDLLHQLEELNLDGVGTVPDGYEGTLAELRERLEALAKVRPRLIEQLQPGARTAELIDIVFIIQEIIAPPRLPPGSAAIDDTGIV
Ga0209027_10092842F004349AGGAVKAHTWLVLPISMLVVAGCSNSAAGPAKPPTAQEILAKPDTANVKDGHFTLVAHIVSGSVTFDATGDGIVVVKPQQASRFTMQTTIAGQPLKFEEIIIGGKEYDLSPDNPRWTVKASTNSSNPSSFKGTEAVYLGEATLPQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDIQQ
Ga0209027_10092843F004003N/AMAAVGLLAACGGPGAPLGPPSAKDILSKPLHTNLNDAHFVVSGKFVSSTPGGVAVDVHGDGALVYKNSGAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTTSGLGRDSFTGASDFAYVGEENLPTGKSWHAKAKDKDGNQFDGWIRESDGYPVKYEISQQGNALTLNFDKYNTGESITAPPASQVVQG
Ga0209027_10092844F004186GGCGGVPTPAAPTAKDVLAKPQQSDLKDAHFTVTGKITDNGTTVELVGDGALAYKPKLAGRFKFTTNVGGQPVTIQEISLDGTNYGLTPASPKWVATQSTSGIDPSAFVGASEQKYVGEENLPQGKAWHATAKDKDGNAFDAYIREKDGYPIKYVETQTGGQNITLSFDKYNTGETITAPPADQVQQG

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