NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209027_1040066

Scaffold Ga0209027_1040066


Overview

Basic Information
Taxon OID3300026300 Open in IMG/M
Scaffold IDGa0209027_1040066 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1766
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051833Metagenome143N
F064596Metagenome128N
F069929Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209027_10400661F064596N/AEIIGALFLMLFAVVLVIVGIGFATDAAHNLDGNLGKGIFAWLLAIAMTFIAVVLYRHSIGLLHSLPMARSVVEIILAGFLLLCAGFVAILGFGVAEGGPHAFPGDVRMGMVGWLMALAITIIAILLFRRSSRRLRSLRELRLHESKLRSEMGKR
Ga0209027_10400662F051833GGAMRWKLLVGLAITWFGLGIMGLFQHAGIIPLDTPLFWTLMGPALLEMLPAMLFQCTGNCVDGFFVDSAHGPSFLTAPGVLLVYVLPSALLARWALRKLLARTPSSSTGHAGKE
Ga0209027_10400663F069929AGGAMESNQVKIDLVTKQPEGGCTLVLVETGPWIGEQKNQNMQRLGNRIAGCVSAVINGHVARRYPATKGVPLTIQVDSYDTPRLEVDILLAKMQNDFDKSPEIQEELRSGRFTSAILLRHRWSDFAGELAKRRPSHRFWHRLKRLFGLCRIGRSSLTV
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