Scaffold Ga0209240

Basic Information
Taxon OID	3300026304 Open in IMG/M
Scaffold ID	Ga0209240_1000073 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026304 Open in IMG/M

Scaffold ID

Ga0209240_1000073 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35350
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (63.41%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

35350

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (63.41%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014307	Metagenome	264	Y
F034727	Metagenome / Metatranscriptome	174	Y
F076956	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_100007311	F014307	GGAG	MRNPDTWLRQQIWRLLWQGPGAVSVYWSIPVPLVCTALSLGGPPGLAVATCCILLVSVLLGLLLILVDEIGSCRNHDLGLLRLSAAKSRDRIAKLGIRSNQVDRFVDALWFNPELNVAFRNTRLQSVELMVLGLDLLSRIASRYGRCGRRVFEANQHPMVRAMGLFECIPLADAEKILIEPLTAWLKDPAEYDPEGWALSLLGEF
Ga0209240_100007334	F076956	N/A	MKKEILTLAMTATGILAFCVDAQQAIDSISPASSGATTVNDLAASPSAYLGQVAVIGVVAAIKPGQGFTIVDQREYADCGLSCLNEPDTKKIPVRWDGDPPKLQQTLRITGVLEKSDRGLIFSAQNFAEAAKE
Ga0209240_10000735	F034727	AGG	MTTDEVLDALGRYTKDSKETDRQTATKLGIRRSILWDWLRGKTKPQKSTLARIAGFLRRVGYL
Ga0209240_10000738	F014307	GAGG	MLNLDLWFRQQLWLQLWQGPGAVSTYLSMPVSLICVGVSAIGSTELQGASLCILSLNIVLGILLILVDEIGSCRNHGLGLLRFSAANSRARIEKLGIKSKQIDRFINALWSNPELEHRFRRKGLQSVELMVQALDILSRIASRYRPSGKKVFEVNQDAIIRAMRLFECLPLTDAEEALVGPLKGWLELPPEYDPEGWALPLFGKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209240_1000073

Overview

Ecosystem & Geography

Associated Families

Sequences