NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1000865

Scaffold Ga0209240_1000865


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1000865 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12330
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007243Metagenome / Metatranscriptome355Y
F022093Metagenome / Metatranscriptome216Y
F034727Metagenome / Metatranscriptome174Y
F087658Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10008652F007243N/AMTPIHATVLSADRFRDQYRLIIQLVPSEFLGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLWRTD
Ga0209240_10008653F087658N/AMPYDPNPRFTPYPIEPMPQALYFQITLEPHLKHSGVATGRKILFLAEVPVTTAKEASEVPEDDGKVYETAERLAANLTCMAMTGEASQPGEDEMHVSFQSMSGMSADLKRRRPDAEKDGVRIWLLGARPE
Ga0209240_10008656F034727GGAMTADEVLDALSRYTKDSMDSDRQTATKLGIRPPILEDWLSGRTRPQKCTLARLAGFLRRAGYL
Ga0209240_10008657F022093AGGMPTLMRVEFSRGLRPDSPRFVLMIEIPDSAAAELNARKVSLETRAYEVAFETTSADRSNKPEHHMSLMSCTRGKVKNLESLGEPSLLAPDACRAWVIKRPSPLQELLDKGWQSRQKNPGSKG
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