NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1002300

Scaffold Ga0209240_1002300


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1002300 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7271
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F014888Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10023005F005268GAGGVTGSDEETEQQRVWRALSEAGLVEIRLDEFAERIRDVKRIVIVRLRELLDFSTAIKERESAAYSLGTLKGLELKVQANAPKPPDPSEK
Ga0209240_10023006F003832N/AMKSTADQLRTEANWPPREGQIISFTSSTGSETTVLKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQAWRKINEVTDSEREECEERLLSMARAGMDPHEREQSFWAELNQYLAYTYLRFKPAECKLQDASDDR
Ga0209240_10023008F014888AGGAGMNHVLEVLLTIVALAGLYSAMPASVSRPGNSAIRAEQAVVVADGSDPMPLCRTRVCTK
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