NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1065663

Scaffold Ga0209240_1065663


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1065663 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001727Metagenome / Metatranscriptome645Y
F038170Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10656632F001727GAGGMDGGARPPKRSFRVNSVDRLGRRMSPAVHDAAEEIAHRAVLHGEKLHIDPAVAASLLEEAAARVSRAIDRKRDSNEQPVRDLRAYLFRAFLRLVNKAVKRQFLVADAIRTLSVTSHNSTDPLAQLERKILVDELLTRGDPVARDMFYRRTQEFSWDEIGLSYGISGHAAESRFSQALRKIRERLDPKSGL
Ga0209240_10656633F038170GGAMKDRRAFEKKDKDLLDFARNYLSNAFPNPDREGCPPDTALRSLAFNPKESQPSVNEHLASCSPCFRRYAELLAQLKLQGAAEEKPSWARVATWSRSHPVLLGAAFVCALFIAIGASLLVNRITVPNPPPLDTHRAPNPVQPINPEVAYSPFSLDLSTLSPVRGPEPSTTGSHERVRVP
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