Scaffold Ga0209688_1021827

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209688_1021827

Scaffold Ga0209688_1021827

Overview

Basic Information
Taxon OID	3300026305 Open in IMG/M
Scaffold ID	Ga0209688_1021827 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1238
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209688_10218271	F000696	GAG	LHSTSLGHSFQQSTNHESRHQRGAISRTTQRTNTCPLLNDSQGNLFTDTILLPYANSAYRKVQRALGNAGGGGFIQDDVLLVVPAVTQTDASLQVSIADATAPPNQLPTDLLMPLKIWERPNSSTDDFLEMVDLTRHGGLPSRAQDVTLSVWEWRADGLYFLGATQDTQIRLRYVKAYPDFTDATSPVLIRNAQEAIAYATAALAAWARGSPLAEKWDDAAADAI
Ga0209688_10218272	F070523	AGGA	VKSDKVSLFPDERVAIHAKLGSILKVGDPAEILLVVILLLALRPVPRRKAPKKGQPNRLP
Ga0209688_10218273	F000739	N/A	CRGNSKARRYTHMTRIEIWLKGLFAAAISGGAGGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPQDSV

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