NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209468_1000009

Scaffold Ga0209468_1000009


Overview

Basic Information
Taxon OID3300026306 Open in IMG/M
Scaffold IDGa0209468_1000009 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)146940
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (53.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001605Metagenome / Metatranscriptome664Y
F002548Metagenome / Metatranscriptome549Y
F092677Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209468_1000009106F092677N/AMRVFPLVSTLAAVLVIGCNGNSAQPDHQAEWRNVLEHKKAAVRADATPQQKQLYADSVRAFVQTHPNHGRAAAVWERIQLEFANELAAIGRYQDAVGFYRAILHRDPSNDDARRGMAGAMAKLAVTRDKLLALEKGMSHHEVASILGRPVPGWIVSNQRPGVTMEAWYYRMRTGGLAAVYFRNGKVLAAEETSNAPLRRFDS
Ga0209468_1000009109F002548N/AMPKFEYESQVEVPSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVECARKAILELFPGFEARYERVVEPYFMRVLQQRWPEEELRFTSPYETVN
Ga0209468_10000092F001605N/AMSERPIAEAQTLAQLPFKILEEVIRQLRSTRNDIIRYGVWNIRNVSDDEFNKTDDRKLLGYFRQDLLETRFLSKGRRIDLIQLWKWFDDQMSGTEPLLIGEDELFLNIQDKDLEKVRRRIEEIQSFFATLRGDDLDAFRRVKYKLRRTVMRLTYDLHHLFKRLEKYRKNVMMSGGAPPYLERERVPLEAVAEIPEPPPMDEHEEAEA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.