NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209468_1010026

Scaffold Ga0209468_1010026


Overview

Basic Information
Taxon OID3300026306 Open in IMG/M
Scaffold IDGa0209468_1010026 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3531
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004090Metagenome / Metatranscriptome453Y
F048901Metagenome / Metatranscriptome147Y
F054731Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0209468_10100261F048901GGAGGMKHGRSLAALFGVLLWGTASRGDITNTTPYDYDQPPAPGKEQGTYMAAATGSFGPDCFFTFIGTAKYLPNPDGSGGKHCTKGNVELTGSGPGCAFKPFETMPLVTESDYTYNGDGTLCERARLVGGPLAGTEFPFHTYVDTN
Ga0209468_10100264F004090GGAGGMRHGRCLAAFLGVLLWGAAGQADITNTTPYDYDSPPRPGKEQGTYMAAATGSLGPDCFFTFIGTAKYLPNPDGSGGKHCTKGNIELSGSGPACAVGKPFETMPVVNLSDYTYNGDGTLCERVKIVGGPLDGMEFPLHTYVDTNGMWVFVTTQDIAYPCPNAASNILELNSQGPGFRIGKFGDDPPGSGALPCTNP
Ga0209468_10100265F054731N/ASPEQNAEREIPVANAFGLAFDGRGSLLVANTGDPTFGKGPGGTPPGGLVTSDTWVVFDVFVNDTAAPLFRPVIP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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