NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209468_1015727

Scaffold Ga0209468_1015727


Overview

Basic Information
Taxon OID3300026306 Open in IMG/M
Scaffold IDGa0209468_1015727 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2757
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001545Metagenome / Metatranscriptome673Y
F001901Metagenome / Metatranscriptome620Y
F001906Metagenome / Metatranscriptome619Y

Sequences

Protein IDFamilyRBSSequence
Ga0209468_10157274F001906AGGAGGMTIEPNDFQSRLSVLLGLQGAVLTDEELSHTAERYPRCRGKEHWDVREYVRRTGVGAREYRVVRGSSIEDVYRSAERVRAAAVGTALNELESQERSGEAPTTLPSPGAGFRS
Ga0209468_10157275F001901GAGMTRRKRPWGQQRGWIVPTDGSPAQELPRHMLGHKLISWPGTMPEKQPAEPVTYPASKDHYHRSVLNPEGVYVYVPEGRDAESLPESIKNEIRRQVKGES
Ga0209468_10157276F001545N/ARDIDVVGVWHGTPYQVASVSSTANVVIVACGPAGRHTTYPKTGQRHTKAPSSGTSTWYERQVLSDVTLAQPLQVIAFSGAKPPVWAKPYATRPSHDSFTFQAQTDGQVRLALVAVREADDAVVLVTKQAATAPRLFRRYAPNVLLWTV
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