NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209468_1039050

Scaffold Ga0209468_1039050


Overview

Basic Information
Taxon OID3300026306 Open in IMG/M
Scaffold IDGa0209468_1039050 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006057Metagenome / Metatranscriptome382Y
F010456Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0209468_10390502F010456GGAGGMRKLTTTLVAAVALVALPHLASAQRRAGASGPKNEIGVDLGASYSHTGSGCNTDCGGLGIGTPVDIRWGLMSNGLLSFEPRFSLNYLSGPNAGGGHLLVFNPDVNVIYRMKKSTARRGMYLTGGLGLAIANTAPSGGSSTTATQLSLNGGVGKRIPMESNAWRIEGFLRYNFENSGKGVPSSFDIGARLGMSFWR
Ga0209468_10390503F006057GGAGMARQAPSRRAIDVTTPNWRLGMRKLFGGMVLVALVLSLPAAAQAQRRAAAPMGGAKHEFGVDVGLAYVSSNITGVGGGIVMVTPLDVRFGFVPRSGKMMWEPRLTLNFNTVGGNTTYLFTPQVNMLYSNSTGGHRRGMYFTGGAGLVLGDNGTTSGTAVKLEGGVGWRKPYEGAAWRYEVGLQWVS
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