NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209469_1006676

Scaffold Ga0209469_1006676


Overview

Basic Information
Taxon OID3300026307 Open in IMG/M
Scaffold IDGa0209469_1006676 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4653
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001757Metagenome / Metatranscriptome641N
F002588Metagenome / Metatranscriptome546Y

Sequences

Protein IDFamilyRBSSequence
Ga0209469_10066761F001757GGAMRVLKPLQDKATTGAGKRLVLPESRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPADNGLAQYYTEEASGLFRARISRPVSNGTVTVTPLVSRGRPDRPDRTKVV
Ga0209469_10066766F002588N/AMRSFLTYLSERCKWASKGTGAVCGWVSLIVGATLAVLLWFYPRWFHDHISDRMNACVLVMVPLLAGASVFLVRWFVSPYPIYMQVRRTLDTLTDTKKEERAKAVHGCFERSAAILKQHHSVLLSFHALSRAEGHRLESNQEVAEVCDLIQEAGYDHPFEGISPGYVPEKDWLPFLKYVRHAPNINPEKGKDYVDAADRWRQDHGYPLPPDDADFVSLVERTLLR
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