Scaffold Ga0209469_1015993

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209469_1015993

Scaffold Ga0209469_1015993

Overview

Basic Information
Taxon OID	3300026307 Open in IMG/M
Scaffold ID	Ga0209469_1015993 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2704
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000472	Metagenome / Metatranscriptome	1100	Y
F048499	Metagenome	148	Y
F051029	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209469_10159931	F051029	N/A	MPPTSVSHPDLTAITVFLASTATPEGGGLPYLDAVLPAEHRLAATRVVRDVGALPPDAILYLLAQ
Ga0209469_10159934	F000472	AGG	MAKTEEVLTQLATRIPKNLHRRLKLYCVTHDIMLQHFVTEAIEEKLGRKARPKKGTA
Ga0209469_10159935	F048499	AGGAGG	MPRQRSLVTVIGDMVQQEVRSAIQSLLGSVPRTKPKTKTRNGRRRKRRGKWRPGGPGRPPKNTKV

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