NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209265_1000910

Scaffold Ga0209265_1000910


Overview

Basic Information
Taxon OID3300026308 Open in IMG/M
Scaffold IDGa0209265_1000910 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8626
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031270Metagenome / Metatranscriptome183Y
F047806Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209265_10009106F031270N/AMLGQPLDQTFSYDAHTIFVLWQGGVPTLISPSQLVVGDRISVRIRARGSASLGQVESTPANHVGDHEPGM
Ga0209265_10009107F047806AGGAGGMRRQLLPLALVALTVLAAGASSTFAAGNGGGALFIFNGHLMADAGSSPTLFVAVSGGNRIALKKLVGQDKTQQFSVGQNTQYIRWTNGVPTVVPESNLVAGDRVSVRIRAARQSSLAQIESTSAGRVADSGANPQFAHKPLWLFIGKLDPRPAAT
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