NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1000541

Scaffold Ga0209055_1000541


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1000541 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26596
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F001221Metagenome / Metatranscriptome743Y
F001794Metagenome / Metatranscriptome633Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100054111F001794AGGVRPVSFACPGSPADAVARLEAAIDARRWNAPGMDGWIRGGGAVLYYRDAARYRALFRRTFVGQFRQRDGTTVLEGRFGMTWLARLLLPVWLAPPAVCFVLALVPTRLQPQTPGPKIVLLLLGTLLGVLAFGRFALEWWGRPGDRDAITQAIRAALHARDRV
Ga0209055_10005416F000195AGGAMDLTVSRAQYDAVRGARHLPDVLKKVLDAASRTGDGYRLHLTYEEATALNELCAWNVHTDANGAVTPESKVFDDLVKAILTHPDY
Ga0209055_10005418F001221GGAMGEPFRTTLTRTTLVAGALGVAFLLLLPRHASLASDYVDTFTVAFCFTFLGYYVDQLLLALPGIRTGVGPLVRVTGWFGGGLWCYVIARWLWMHYGRDLRDLPGLVWGGVFLVVLNGVARRQDAKFHDGGA
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