NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1001297

Scaffold Ga0209055_1001297


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1001297 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16650
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046941Metagenome150N
F082478Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100129711F082478AGGAGGMLLEVMFVAWLSAQMDSRDCFIFGEVSATEEQVFDLQATGCPIKIERKGKLIKLTSPKYIVEITIPDAAGTQKFLYQWGQSEATIGDQTVQIAYREVGGG
Ga0209055_100129715F046941GGAGMFMKIRLMVASIAALLSLWACASSSDRITEYLSGFQPPSDSAQPVALPLNAGLVMVLPEDEMGKPTAPSRDALQAVAERLQKDIQASPNFVIQKVFPSITIPANGLHGLSLERLQGLARAGNLTQMVVVMAVSRSASKLRFWPIMEHQLYVRMDAALVDVPTGRVLMTESGEDDYVMAEALDYVERISYPRLYYRNFTFGGPFTVVKGDPYKALGEQTFRGAADQLGMTLRKRLGPEGLSSLLLRLPLAG
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