Basic Information | |
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Taxon OID | 3300026309 Open in IMG/M |
Scaffold ID | Ga0209055_1003099 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10224 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000484 | Metagenome / Metatranscriptome | 1088 | Y |
F001801 | Metagenome / Metatranscriptome | 632 | Y |
F011376 | Metagenome / Metatranscriptome | 291 | Y |
F104936 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209055_100309910 | F011376 | GAG | MSAPPPAVAALAWAVVGPAALIYGATRIRRGKVGLHVTLMSVSAVIEIAVVVGFSFLMVPSPRRAALVALPFFKIHLAFAVTALAGLAWQLTSRAVARLRPLHRHTGPYVVLAWCLALLTGIYNYVFLYVMGSP |
Ga0209055_100309911 | F001801 | N/A | MKTILRHLVLCSLPLVFAAGSGHYFTTIQGSCGAMVGALFSGKCAGRQRQYLARFQLGGGAAGTVIAATLGAWLEHRRRRAVQRTTAEQPTTPVGEPS |
Ga0209055_10030993 | F000484 | GGA | VKPVVWASVCALGACAPSNPCTAAAMHLQTLYAQRYVGHWVVARGDTLTLPELGDRFNLTDVILDSTRVVVGRTCHFRGTLIFRVPPDTLPVTWVGYPEQALVYGWPATLGPFAGIGASRVGDSLAGAILFDSRLGVRARPGATARFVAGRARS |
Ga0209055_10030994 | F104936 | GGA | VVSYGSMLGIAFGGFTWVVVAGNLIHEPVVSLAGALLGVGVWIVGGRALLRYPARRGLVMGIAVLFVVFADWAFLGIVLPRIPEGGSIYVGTSRSAYAALHPILIVAGLAGTGLVLWDLLFRRP |
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