NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1016658

Scaffold Ga0209055_1016658


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1016658 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3638
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014368Metagenome / Metatranscriptome263N
F016387Metagenome / Metatranscriptome247N

Sequences

Protein IDFamilyRBSSequence
Ga0209055_10166582F016387GAGGMTLAPTRAMLELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILSDEEARELGREAGTNTLPEMVLFWFKKFNMENALKAMEMIGSYGNAFRLQYTLDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPMGAKVETRETDGQVVATIIRPLTGIASEHKDALLIPSFAGAKNGRGYKR
Ga0209055_10166583F014368N/AMTELENPLKPEVRKSPDTVTRTFRIDRDVDRKMDGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDTVLKALEFLGAQYGRAFTSDHAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRKGQRVDPDSRDA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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