NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209239_1028171

Scaffold Ga0209239_1028171


Overview

Basic Information
Taxon OID3300026310 Open in IMG/M
Scaffold IDGa0209239_1028171 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2696
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000484Metagenome / Metatranscriptome1088Y
F104936Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209239_10281711F000484N/ACALGACAPSNPCSAGAMHLQTRYAQRYVGHWVVSRGDTLTLPELGDRFKLTDVVLDTTRMVVGRTCHFRGTLVFRVPPDTLPVTWIGYPEQALVYGWPATLGPFAGIGATRVGDSLVGAILFDSRLGVRARPGATARFVSGRARS
Ga0209239_10281712F104936GGAVVSYGSMLGIAFGGFTWVVVAGNLIHEPAVSLAGGLLGAGVWIAGGRALVRYPVRRRLVMGIVVLFVVFVDWGFLGIVLPRIPEGGSIYFGTSRSAYAMLQPVLIAGGLAGTGLVLWDLFFRRP
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