NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209239_1031804

Scaffold Ga0209239_1031804


Overview

Basic Information
Taxon OID3300026310 Open in IMG/M
Scaffold IDGa0209239_1031804 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2503
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097027Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209239_10318043F097027AGGMSSVAQNLLPVLQADQQKADQSVAGPNGPGYCSYVDVQSILNVAFTDSSVPNLGTVNDLIVRATSYVNQVSSHSWTSQQVTEYYDAIGSGPRAGLIIVRGRPLLSVKEAAWWYGGIQAWMPGLQGYSEETVNVLVGPSTILDSFQTTIPSDNLQQPQSYLVYYPEGKIVWNTMRLDSRLRYRVIYTYGYPVPPDFIRDLTSIIVAIDVLTFWGSQLGIAEALSMMKKRLEEKKFRLEARASQRGAAAVG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.