NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209239_1122477

Scaffold Ga0209239_1122477


Overview

Basic Information
Taxon OID3300026310 Open in IMG/M
Scaffold IDGa0209239_1122477 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1076
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006542Metagenome / Metatranscriptome370Y
F039568Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0209239_11224771F039568N/AVKMAQEPSQSVANSLSFVTFAKCFCINPVYINPVYGGGYYKKRKGWVLIDLATRAETYFKTLRDAKHDLIRLYMEAAPKKMATQGC
Ga0209239_11224772F006542GAGGMNETELGELMTAPGFFRFLAQQAKLSPEEVKRIYLLGMPWGLWPPDLDISHEAAEAGVDVFTYLAALQPLLDMDTQEKEAQLAAYEATLTGGETTQPIPAVRAHVEKVAALSGEDEETICSLLHALYAYRQRVGQLSIEKVGQFTSRHKMEQEKAASIAKLQRVMVAEIEQRKSLL
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