NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209723_1038714

Scaffold Ga0209723_1038714


Overview

Basic Information
Taxon OID3300026311 Open in IMG/M
Scaffold IDGa0209723_1038714 Open in IMG/M
Source Dataset NameAnaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2508
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor → Anaerobic Biogas Reactor Microbial Communites From Washington, Usa

Source Dataset Sampling Location
Location NameWashington, USA
CoordinatesLat. (o)47.6525Long. (o)-122.3049Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F096294Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209723_10387141F071725AGGAGGMKTLLNQTESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFHE
Ga0209723_10387143F072892GGAGGMNINLLKTISTRLFGLYSQFKSVVSDLETNNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIINAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENVLAGK
Ga0209723_10387148F096294GGAGGMSEEIPGKNEEVDDNYMIEFSGSVAQPISTKHYKFFTQEQYESELKEAYFAGWEDRNDCELREIIHKRKATKEDYFKWFMEEKEKR
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