NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1000156

Scaffold Ga0209153_1000156


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1000156 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36671
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053962Metagenome / Metatranscriptome140Y
F067512Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0209153_100015613F067512AGGGGGVILRARDKVLEILQTENACTAWYRTKDPDPAFTFRTVTYALDRDGNAFVRKTQESGGIALIHNPYVASVLQGQGWNATVTINVNGAFFFPAANMLDDHSEGGPLTVEGTRLIQVGPYAGGTFRAQVLALLHEFGHVIDLLPEDHDDHDGKSRQNTFAVLRACRAEVESKERPRTFLVSR
Ga0209153_100015614F053962N/AMRQKRLLRNLLFLGLGLLAGFLALAVAVPLEPLIPVPLLVLLSPGLKIAELIMPDTQGSLAWTFGWFLRIAILSNAAFYYAVFALLRNFLTHRAAKES
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