NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1000225

Scaffold Ga0209153_1000225


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1000225 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30388
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000232Metagenome / Metatranscriptome1513Y
F062652Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0209153_100022513F062652GGAGVPTLDDEQFEAYLQQFRPCVPEPLPAVERRHRARRVFIVGAWATAAVAILVLGALTLHLHTNRVRVAETSGNAGTPKHLQDSQPLTMRSANALMAKAPSFKTMVDDMAFRSQTVPLPKGKRSAVAVLGKEKIKL
Ga0209153_100022523F000232N/AMKHPKQNKHAPQTHPSALAVPSYHRILVKHGLIEKTLSIPDAYEVFLKVGADPEVQKLRSKVARGNKMKHVPALYLATAMALQGMTKQEIEALKLRIKEKRV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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