Basic Information | |
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Taxon OID | 3300026312 Open in IMG/M |
Scaffold ID | Ga0209153_1000619 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15231 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California: Angelo Coastal Reserve | |||||||
Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000484 | Metagenome / Metatranscriptome | 1088 | Y |
F001801 | Metagenome / Metatranscriptome | 632 | Y |
F011376 | Metagenome / Metatranscriptome | 291 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209153_100061913 | F011376 | GAG | MSAPPQAVTALAWALAGPPILIYGATRIRRGRIALHVTLMSVSAVIEIAVVVGFSFLMAPSPRRAALVALPFFKIHLAFAVAALAGLLWQLTSRAVARLRPLHRHTGPYVVLVWCLALLTGIYNYIFLYVMGSP |
Ga0209153_100061914 | F001801 | N/A | MKTFLRHLVVCSLPLLFAAGSGYYFTTIQGSCGAMVGALFSGKCAGRQRQYLVRFQLGGAAGGIVIAATLGTWLEHRRRRAVQRTTAEQPTTPVGEPS |
Ga0209153_10006198 | F000484 | N/A | MHLQTRYAQRYVGHWVVARGDTLTLPELGDRFKLTDVVLDSTRVVVHRACHFTGTLVFRVPRDTLPVTWIGYPEQALVYGWPAALGPFAGIGATRVGDSLVGAILFDSRLGVKVRPGATARFVAGRARR |
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