NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1000619

Scaffold Ga0209153_1000619


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1000619 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15231
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000484Metagenome / Metatranscriptome1088Y
F001801Metagenome / Metatranscriptome632Y
F011376Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0209153_100061913F011376GAGMSAPPQAVTALAWALAGPPILIYGATRIRRGRIALHVTLMSVSAVIEIAVVVGFSFLMAPSPRRAALVALPFFKIHLAFAVAALAGLLWQLTSRAVARLRPLHRHTGPYVVLVWCLALLTGIYNYIFLYVMGSP
Ga0209153_100061914F001801N/AMKTFLRHLVVCSLPLLFAAGSGYYFTTIQGSCGAMVGALFSGKCAGRQRQYLVRFQLGGAAGGIVIAATLGTWLEHRRRRAVQRTTAEQPTTPVGEPS
Ga0209153_10006198F000484N/AMHLQTRYAQRYVGHWVVARGDTLTLPELGDRFKLTDVVLDSTRVVVHRACHFTGTLVFRVPRDTLPVTWIGYPEQALVYGWPAALGPFAGIGATRVGDSLVGAILFDSRLGVKVRPGATARFVAGRARR
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