NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209153_1017496

Scaffold Ga0209153_1017496


Overview

Basic Information
Taxon OID3300026312 Open in IMG/M
Scaffold IDGa0209153_1017496 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2334
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045323Metagenome153N
F087677Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209153_10174961F045323GAGMAITHLSAALKHTSVPEPQLERRDVELAIQHWQRNTWGKDCVPLLDTFDFSPMKTSWGHRFLICGGPAVESSVFVSYGSGFARLLGLPAKPVTTIPFIQQVPAHHREMFSEACSKAMMESSPVTLEGTLGFGAGAQLFRAVFMPIMLRPNWSKQLIFGSFN
Ga0209153_10174962F087677AGGAVADMPAQEGSVSAAVGSGTPDERRDIQLAIEHWQRNTWGPDSIPLLDTFDFAPLRERWGHWFLICGNHSIESAVFVSYGAGFAQLLGLAHEPVTDLPCIEQVPVPYRAMFSAGYNRAGSASSPVTLDGTFRFEKRVELYRAVFMPIMLQPNWSKQLIFGSFNRRELGAV

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