NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1005331

Scaffold Ga0209268_1005331


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1005331 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5662
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004347Metagenome / Metatranscriptome442Y
F011653Metagenome / Metatranscriptome288Y
F048222Metagenome148N
F050267Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0209268_10053311F048222N/ASRLFFQMLRTDYGTEEEIAAVCLRHRGDVHEAAWHYANVVSTYGTDTWWRTTSTKDGWRLAFPLAAILFRHMWQPEVIDGGLPKVEAMYRVRLANALMEDSQVVAATQELERAARLLGPNGESKVEALRENLPRVDDSPLLTFCRSSSNN
Ga0209268_100533110F011653AGGAMTDKDKPRADETDHRNAGREQGELDRARDWHREHRAEHHRKDLSQPGTRAWRTDHTEVMLVEAPGSEESEVYLRVTDITTGSYVQAPLTADDLDIVAHILQHHAARLRRLAERR
Ga0209268_100533111F050267GAGGMRRPENLTSEDFHAFANVTQRILWQGVVAVRRARSSIADSRRLCEETRELLAARRDDRLFRRRPLNAR
Ga0209268_100533113F004347AGGVQPETARWLNESRGSFGAAQRRFNDISSMDVTGAAALFMSAEYAVKAVIAEHYGFLPPRFETHRIVNLSHQIGLWSQLPPDLRAHLADIAHLDPNLRRPLPTVSAGRAPRNFAPLDPDVRDPRETSYETVVASSSNSEWQQRLTTAPRFIEYLERDVIGNPAAFGKLTF
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