NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209268_1009232

Scaffold Ga0209268_1009232


Overview

Basic Information
Taxon OID3300026314 Open in IMG/M
Scaffold IDGa0209268_1009232 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4066
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024182Metagenome / Metatranscriptome207Y
F048200Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209268_10092323F024182AGGGGGVDRQPACGFCDGTGLWADQDGDTDPCPLCEGTGIAPTGARDDAPVSEAALPRLLAVLSRLSQPERQRLYEELHARYDCRIYRG
Ga0209268_10092324F048200GAGMLGPAAAGIALLVASASATAAGDGNYFPLQAGNWWSYEELDDEGRPLSRETWTVLDTTPGDRAGEFHLRSFTKRLDMLGHTGHRWEGHEFLRTTAVGLYKRYPAKGHDAEFEVTLLKEPIAAGTRWHDAQGDCEVISRGVCTGPRGELPDCAIIACRLGRPTATVVTSTYGRDVGMVRQELDVVQFMPGFHAAGPVPLPCDSARGGHSTLRLTAFHVAPR
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