NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209686_1123100

Scaffold Ga0209686_1123100


Overview

Basic Information
Taxon OID3300026315 Open in IMG/M
Scaffold IDGa0209686_1123100 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028916Metagenome190Y
F051573Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0209686_11231001F051573AGGGGGVIKQTVRAASETDGLVNDMRQLAQAVVPGQTVDDPAYMERTISTRIATFLMVLLVTIIFATSALPDVGPTL
Ga0209686_11231002F028916N/AGLNGLITVAGHAAELDAPTQGLIRAVGDEMGATLLRLATLDEERQQIEAMEQANRLAGLAAPYAADQRAALGAIRPALADLLRSESLHLEWVNGDRLQLVVPEGDPLQDHAPSWLPLAGTRSAEAQLEGRALREPLAGRRPEDLFGVPAGLRHIAVAPIQCAEVEGTLQIGRRLPRAYAASEVLVLQRLAERLGVLFAAAAPATSVVNSTTGGIP
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